J5_9N9J_003

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9N9J|1|L5|G|3620, 9N9J|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9N9J_003 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.1042

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9N9J|1|L5|G|2855
9N9J|1|L5|C|2856
9N9J|1|L5|A|2857
9N9J|1|L5|A|2858
9N9J|1|L5|G|2859
9N9J|1|L5|C|2860
9N9J|1|L5|C|2861
9N9J|1|L5|G|2862
9N9J|1|L5|G|2863
*
9N9J|1|L5|U|2887
9N9J|1|L5|G|2888
*
9N9J|1|L5|U|3613
9N9J|1|L5|G|3614
*
9N9J|1|L5|C|3618
9N9J|1|L5|G|3619
9N9J|1|L5|G|3620
9N9J|1|L5|A|3621
9N9J|1|L5|C|3622
9N9J|1|L5|C|3623
9N9J|1|L5|A|3624
9N9J|1|L5|G|3625
9N9J|1|L5|G|3626
*
9N9J|1|L5|C|3835
9N9J|1|L5|A|3836
9N9J|1|L5|C|3837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

Large ribosomal subunit protein eL19

Chain LV

Large ribosomal subunit protein uL14

Chain LW

Large ribosomal subunit protein eL24