J5_9N9J_004
3D structure
- PDB id
- 9N9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 9N9J|1|L5|A|3908, 9N9J|1|L5|A|4394, 9N9J|1|L5|G|4451, 9N9J|1|L5|U|4555, 9N9J|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9N9J|1|L5|A|3902
9N9J|1|L5|A|3903
9N9J|1|L5|G|3904
9N9J|1|L5|A|3905
9N9J|1|L5|A|3906
9N9J|1|L5|G|3907
9N9J|1|L5|A|3908
9N9J|1|L5|C|3909
9N9J|1|L5|C|3910
*
9N9J|1|L5|G|4392
9N9J|1|L5|G|4393
9N9J|1|L5|A|4394
9N9J|1|L5|U|4395
9N9J|1|L5|A|4396
9N9J|1|L5|A|4397
9N9J|1|L5|C|4398
9N9J|1|L5|U|4399
9N9J|1|L5|G|4400
*
9N9J|1|L5|C|4444
9N9J|1|L5|U|4445
9N9J|1|L5|U|4446
9N9J|1|L5|C|4447
9N9J|1|L5|G|4448
9N9J|1|L5|A|4449
9N9J|1|L5|U|4450
9N9J|1|L5|G|4451
9N9J|1|L5|U|4452
9N9J|1|L5|C|4453
*
9N9J|1|L5|G|4528
9N9J|1|L5|G|4529
9N9J|1|L5|U|4530
9N9J|1|L5|U|4531
9N9J|1|L5|U|4532
9N9J|1|L5|A|4533
9N9J|1|L5|G|4534
*
9N9J|1|L5|U|4552
9N9J|1|L5|A|4553
9N9J|1|L5|G|4554
9N9J|1|L5|U|4555
9N9J|1|L5|U|4556
9N9J|1|L5|U|4557
9N9J|1|L5|U|4558
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- Large ribosomal subunit protein uL4
- Chain Lb
- 60S ribosomal protein L29
- Chain u3
- Transfer RNA; tRNA
- Chain y3
- Endoplasmin
Coloring options: