J5_9NDP_007

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|30
9NDP|1|K|U|31
9NDP|1|K|U|32
9NDP|1|K|G|33
9NDP|1|K|U|34
*
9NDP|1|K|A|521
9NDP|1|K|A|522
9NDP|1|K|A|523
9NDP|1|K|U|524
9NDP|1|K|A|525
9NDP|1|K|A|526
9NDP|1|K|C|527
*
9NDP|1|K|G|558
9NDP|1|K|G|559
9NDP|1|K|A|560
9NDP|1|K|A|561
9NDP|1|K|U|562
9NDP|1|K|G|563
9NDP|1|K|A|564
9NDP|1|K|G|565
*
9NDP|1|K|C|585
9NDP|1|K|G|586
9NDP|1|K|A|587
9NDP|1|K|G|588
9NDP|1|K|G|589
9NDP|1|K|A|590
9NDP|1|K|U|591
9NDP|1|K|C|592
9NDP|1|K|C|593
9NDP|1|K|A|594
9NDP|1|K|U|595
*
9NDP|1|K|A|641
9NDP|1|K|U|642
9NDP|1|K|A|643
9NDP|1|K|G|644

Current chains

Chain K

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

uS12