J5_9NDP_008
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9NDP|1|K|U|55, 9NDP|1|K|A|92, 9NDP|1|K|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NDP_008 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0932
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NDP|1|K|C|53
9NDP|1|K|A|54
9NDP|1|K|U|55
9NDP|1|K|G|56
*
9NDP|1|K|C|89
9NDP|1|K|G|90
9NDP|1|K|A|91
9NDP|1|K|A|92
9NDP|1|K|U|93
9NDP|1|K|G|94
9NDP|1|K|G|95
9NDP|1|K|C|96
*
9NDP|1|K|G|434
9NDP|1|K|A|435
9NDP|1|K|G|436
*
9NDP|1|K|C|457
9NDP|1|K|A|458
9NDP|1|K|C|459
*
9NDP|1|K|G|470
9NDP|1|K|G|471
9NDP|1|K|C|472
9NDP|1|K|A|473
9NDP|1|K|G|474
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S8
- Chain DD
- Ribosomal protein S9 (Predicted)
- Chain NN
- Small ribosomal subunit protein eS24
- Chain V
- Ribosomal protein L23
- Chain x
- eS4
- Chain z
- 40S ribosomal protein S6
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