J5_9NJF_002
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9NJF|1|R1|A|532, 9NJF|1|R1|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NJF_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0755
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NJF|1|R1|C|531
9NJF|1|R1|A|532
9NJF|1|R1|G|533
*
9NJF|1|R1|C|560
9NJF|1|R1|G|561
9NJF|1|R1|U|562
9NJF|1|R1|A|563
9NJF|1|R1|C|564
*
9NJF|1|R1|G|577
9NJF|1|R1|G|578
9NJF|1|R1|G|579
*
9NJF|1|R1|C|1261
9NJF|1|R1|A|1262
*
9NJF|1|R1|U|2017
9NJF|1|R1|G|2018
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 21
- Large ribosomal subunit protein bL21
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 32
- 50S ribosomal protein L32
- Chain 4
- Large ribosomal subunit protein uL4
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