J5_9NJF_004
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9NJF|1|R1|U|1758, 9NJF|1|R1|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NJF_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0804
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NJF|1|R1|G|1674
9NJF|1|R1|C|1675
9NJF|1|R1|A|1676
9NJF|1|R1|A|1677
9NJF|1|R1|A|1678
9NJF|1|R1|A|1679
9NJF|1|R1|U|1680
9NJF|1|R1|G|1681
9NJF|1|R1|G|1682
*
9NJF|1|R1|C|1706
9NJF|1|R1|G|1707
*
9NJF|1|R1|U|1751
9NJF|1|R1|C|1752
*
9NJF|1|R1|G|1756
9NJF|1|R1|A|1757
9NJF|1|R1|U|1758
9NJF|1|R1|A|1759
9NJF|1|R1|C|1760
9NJF|1|R1|C|1761
9NJF|1|R1|A|1762
9NJF|1|R1|G|1763
9NJF|1|R1|C|1764
*
9NJF|1|R1|G|1988
9NJF|1|R1|G|1989
9NJF|1|R1|C|1990
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 14
- Large ribosomal subunit protein uL14
- Chain 19
- 50S ribosomal protein L19
- Chain 3
- 50S ribosomal protein L3
- Chain R3
- Small subunit ribosomal RNA; SSU rRNA
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