J5_9NJF_009
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9NJF|1|R3|A|60, 9NJF|1|R3|A|109, 9NJF|1|R3|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NJF_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1048
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NJF|1|R3|C|58
9NJF|1|R3|A|59
9NJF|1|R3|A|60
9NJF|1|R3|G|61
*
9NJF|1|R3|C|106
9NJF|1|R3|G|107
9NJF|1|R3|G|108
9NJF|1|R3|A|109
9NJF|1|R3|C|110
9NJF|1|R3|G|111
9NJF|1|R3|G|112
9NJF|1|R3|G|113
*
9NJF|1|R3|C|314
9NJF|1|R3|A|315
9NJF|1|R3|C|316
*
9NJF|1|R3|G|337
9NJF|1|R3|A|338
9NJF|1|R3|C|339
*
9NJF|1|R3|G|350
9NJF|1|R3|G|351
9NJF|1|R3|C|352
9NJF|1|R3|A|353
9NJF|1|R3|G|354
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large ribosomal subunit protein uL14
- Chain 19
- 50S ribosomal protein L19
- Chain sp
- Small ribosomal subunit protein bS16
- Chain st
- 30S ribosomal protein S20
Coloring options: