J5_9NJV_004

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC

Length

40 nucleotides

Bulged bases

9NJV|1|R1|A|2062, 9NJV|1|R1|A|2448, 9NJV|1|R1|U|2449, 9NJV|1|R1|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|G|2057
9NJV|1|R1|A|2058
9NJV|1|R1|A|2059
9NJV|1|R1|A|2060
9NJV|1|R1|G|2061
9NJV|1|R1|A|2062
9NJV|1|R1|C|2063
9NJV|1|R1|C|2064
*
9NJV|1|R1|G|2446
9NJV|1|R1|G|2447
9NJV|1|R1|A|2448
9NJV|1|R1|U|2449
9NJV|1|R1|A|2450
9NJV|1|R1|A|2451
9NJV|1|R1|C|2452
9NJV|1|R1|A|2453
9NJV|1|R1|G|2454
*
9NJV|1|R1|C|2498
9NJV|1|R1|C|2499
9NJV|1|R1|U|2500
9NJV|1|R1|C|2501
9NJV|1|R1|G|2502
9NJV|1|R1|A|2503
9NJV|1|R1|U|2504
9NJV|1|R1|G|2505
9NJV|1|R1|U|2506
9NJV|1|R1|C|2507
*
9NJV|1|R1|G|2582
9NJV|1|R1|G|2583
9NJV|1|R1|U|2584
9NJV|1|R1|U|2585
9NJV|1|R1|U|2586
9NJV|1|R1|A|2587
9NJV|1|R1|G|2588
*
9NJV|1|R1|C|2606
9NJV|1|R1|G|2607
9NJV|1|R1|G|2608
9NJV|1|R1|U|2609
9NJV|1|R1|C|2610
9NJV|1|R1|C|2611

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 16

50S ribosomal protein L16

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32

Chain 4

Large ribosomal subunit protein uL4

Chain T

Transfer RNA; tRNA