J5_9NJV_007

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUGUA*UACUUUCAG*CAGAAGAAG*CAAG

Length

32 nucleotides

Bulged bases

9NJV|1|R3|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R3|C|36
9NJV|1|R3|U|37
9NJV|1|R3|G|38
9NJV|1|R3|G|39
*
9NJV|1|R3|C|403
9NJV|1|R3|G|404
9NJV|1|R3|U|405
9NJV|1|R3|G|406
9NJV|1|R3|U|407
9NJV|1|R3|A|408
*
9NJV|1|R3|U|434
9NJV|1|R3|A|435
9NJV|1|R3|C|436
9NJV|1|R3|U|437
9NJV|1|R3|U|438
9NJV|1|R3|U|439
9NJV|1|R3|C|440
9NJV|1|R3|A|441
9NJV|1|R3|G|442
*
9NJV|1|R3|C|492
9NJV|1|R3|A|493
9NJV|1|R3|G|494
9NJV|1|R3|A|495
9NJV|1|R3|A|496
9NJV|1|R3|G|497
9NJV|1|R3|A|498
9NJV|1|R3|A|499
9NJV|1|R3|G|500
*
9NJV|1|R3|C|545
9NJV|1|R3|A|546
9NJV|1|R3|A|547
9NJV|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12