J5_9NJV_008

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA

Length

27 nucleotides

Bulged bases

9NJV|1|R3|A|109, 9NJV|1|R3|C|352, 9NJV|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R3|U|56
9NJV|1|R3|G|57
9NJV|1|R3|C|58
9NJV|1|R3|A|59
9NJV|1|R3|A|60
9NJV|1|R3|G|61
*
9NJV|1|R3|C|106
9NJV|1|R3|G|107
9NJV|1|R3|G|108
9NJV|1|R3|A|109
9NJV|1|R3|C|110
9NJV|1|R3|G|111
9NJV|1|R3|G|112
9NJV|1|R3|G|113
*
9NJV|1|R3|C|314
9NJV|1|R3|A|315
9NJV|1|R3|C|316
*
9NJV|1|R3|G|337
9NJV|1|R3|A|338
9NJV|1|R3|C|339
*
9NJV|1|R3|G|350
9NJV|1|R3|G|351
9NJV|1|R3|C|352
9NJV|1|R3|A|353
9NJV|1|R3|G|354
9NJV|1|R3|C|355
9NJV|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20