J5_9NKL_003

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9NKL|1|R1|U|1758, 9NKL|1|R1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NKL_003 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0904

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NKL|1|R1|G|1674
9NKL|1|R1|C|1675
9NKL|1|R1|A|1676
9NKL|1|R1|A|1677
9NKL|1|R1|A|1678
9NKL|1|R1|A|1679
9NKL|1|R1|U|1680
9NKL|1|R1|G|1681
9NKL|1|R1|G|1682
*
9NKL|1|R1|C|1706
9NKL|1|R1|G|1707
*
9NKL|1|R1|U|1751
9NKL|1|R1|C|1752
*
9NKL|1|R1|G|1756
9NKL|1|R1|A|1757
9NKL|1|R1|U|1758
9NKL|1|R1|A|1759
9NKL|1|R1|C|1760
9NKL|1|R1|C|1761
9NKL|1|R1|A|1762
9NKL|1|R1|G|1763
9NKL|1|R1|C|1764
*
9NKL|1|R1|G|1988
9NKL|1|R1|G|1989
9NKL|1|R1|C|1990

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3

Chain R3

Small subunit ribosomal RNA; SSU rRNA