J5_9NL6_008
3D structure
- PDB id
- 9NL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9NL6|1|R3|A|60, 9NL6|1|R3|A|109, 9NL6|1|R3|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NL6_008 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.093
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NL6|1|R3|C|58
9NL6|1|R3|A|59
9NL6|1|R3|A|60
9NL6|1|R3|G|61
*
9NL6|1|R3|C|106
9NL6|1|R3|G|107
9NL6|1|R3|G|108
9NL6|1|R3|A|109
9NL6|1|R3|C|110
9NL6|1|R3|G|111
9NL6|1|R3|G|112
9NL6|1|R3|G|113
*
9NL6|1|R3|C|314
9NL6|1|R3|A|315
9NL6|1|R3|C|316
*
9NL6|1|R3|G|337
9NL6|1|R3|A|338
9NL6|1|R3|C|339
*
9NL6|1|R3|G|350
9NL6|1|R3|G|351
9NL6|1|R3|C|352
9NL6|1|R3|A|353
9NL6|1|R3|G|354
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L14
- Chain 19
- 50S ribosomal protein L19
- Chain sp
- Small ribosomal subunit protein bS16
- Chain st
- 30S ribosomal protein S20
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