J5_9NO7_002

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9NO7|1|A|U|272|||A, 9NO7|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|A|C|268
9NO7|1|A|U|269
9NO7|1|A|A|270
9NO7|1|A|A|271
9NO7|1|A|A|271|||A
9NO7|1|A|C|271|||B
*
9NO7|1|A|G|271|||V
9NO7|1|A|G|271|||W
9NO7|1|A|G|271|||X
9NO7|1|A|U|271|||Y
9NO7|1|A|C|271|||Z
9NO7|1|A|G|272
9NO7|1|A|U|272|||A
9NO7|1|A|G|272|||B
*
9NO7|1|A|C|366
9NO7|1|A|G|370
9NO7|1|A|A|371
9NO7|1|A|G|372
9NO7|1|A|U|373
9NO7|1|A|A|374
9NO7|1|A|C|375
*
9NO7|1|A|G|399
9NO7|1|A|G|400
9NO7|1|A|A|401
9NO7|1|A|A|402
9NO7|1|A|U|403
9NO7|1|A|C|404
9NO7|1|A|U|405
9NO7|1|A|G|406
*
9NO7|1|A|U|421
9NO7|1|A|A|422
9NO7|1|A|A|423
9NO7|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain I

50S ribosomal protein L9