J5_9NO7_006
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 9NO7|1|A|A|2448, 9NO7|1|A|U|2449, 9NO7|1|A|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NO7|1|A|A|2057
9NO7|1|A|A|2058
9NO7|1|A|A|2059
9NO7|1|A|A|2060
9NO7|1|A|G|2061
9NO7|1|A|A|2062
9NO7|1|A|C|2063
9NO7|1|A|C|2064
*
9NO7|1|A|G|2446
9NO7|1|A|G|2447
9NO7|1|A|A|2448
9NO7|1|A|U|2449
9NO7|1|A|A|2450
9NO7|1|A|A|2451
9NO7|1|A|C|2452
9NO7|1|A|A|2453
*
9NO7|1|A|U|2500
9NO7|1|A|C|2501
9NO7|1|A|G|2502
9NO7|1|A|2MA|2503
9NO7|1|A|U|2504
9NO7|1|A|G|2505
9NO7|1|A|U|2506
9NO7|1|A|C|2507
*
9NO7|1|A|G|2582
9NO7|1|A|G|2583
9NO7|1|A|U|2584
9NO7|1|A|U|2585
9NO7|1|A|C|2586
9NO7|1|A|A|2587
9NO7|1|A|G|2588
*
9NO7|1|A|C|2606
9NO7|1|A|G|2607
9NO7|1|A|G|2608
9NO7|1|A|U|2609
9NO7|1|A|C|2610
9NO7|1|A|U|2611
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L22
- Chain w
- Peptide chain release factor 1
- Chain x
- Transfer RNA; tRNA
- Chain z
- P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part
Coloring options: