J5_9NO7_009

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9NO7|1|a|A|109, 9NO7|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|a|C|58
9NO7|1|a|A|59
9NO7|1|a|A|60
9NO7|1|a|G|61
*
9NO7|1|a|C|106
9NO7|1|a|G|107
9NO7|1|a|G|108
9NO7|1|a|A|109
9NO7|1|a|C|110
9NO7|1|a|G|111
9NO7|1|a|G|112
9NO7|1|a|G|113
*
9NO7|1|a|C|314
9NO7|1|a|A|315
9NO7|1|a|G|316
*
9NO7|1|a|C|337
9NO7|1|a|A|338
9NO7|1|a|C|339
*
9NO7|1|a|G|350
9NO7|1|a|G|351
9NO7|1|a|C|352
9NO7|1|a|A|353
9NO7|1|a|G|354

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L14

Chain T

50S ribosomal protein L19

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20