J5_9O3Y_006
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9O3Y|1|S2|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3Y|1|S2|C|30
9O3Y|1|S2|U|31
9O3Y|1|S2|U|32
9O3Y|1|S2|G|33
9O3Y|1|S2|PSU|34
*
9O3Y|1|S2|A|521
9O3Y|1|S2|A|522
9O3Y|1|S2|A|523
9O3Y|1|S2|U|524
9O3Y|1|S2|A|525
9O3Y|1|S2|A|526
9O3Y|1|S2|C|527
*
9O3Y|1|S2|G|558
9O3Y|1|S2|G|559
9O3Y|1|S2|A|560
9O3Y|1|S2|A|561
9O3Y|1|S2|U|562
9O3Y|1|S2|G|563
*
9O3Y|1|S2|C|592
9O3Y|1|S2|C|593
9O3Y|1|S2|A|594
9O3Y|1|S2|U|595
*
9O3Y|1|S2|A|641
9O3Y|1|S2|U|642
9O3Y|1|S2|A|643
9O3Y|1|S2|OMG|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: