J5_9OGY_002

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAUU*AAUAG

Length

39 nucleotides

Bulged bases

9OGY|1|2|G|588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|30
9OGY|1|2|U|31
9OGY|1|2|U|32
9OGY|1|2|G|33
9OGY|1|2|U|34
*
9OGY|1|2|A|521
9OGY|1|2|A|522
9OGY|1|2|A|523
9OGY|1|2|U|524
9OGY|1|2|A|525
9OGY|1|2|A|526
9OGY|1|2|C|527
9OGY|1|2|A|528
*
9OGY|1|2|U|557
9OGY|1|2|G|558
9OGY|1|2|G|559
9OGY|1|2|A|560
9OGY|1|2|A|561
9OGY|1|2|U|562
9OGY|1|2|G|563
9OGY|1|2|A|564
9OGY|1|2|G|565
*
9OGY|1|2|C|585
9OGY|1|2|G|586
9OGY|1|2|A|587
9OGY|1|2|G|588
9OGY|1|2|G|589
9OGY|1|2|A|590
9OGY|1|2|U|591
9OGY|1|2|C|592
9OGY|1|2|C|593
9OGY|1|2|A|594
9OGY|1|2|U|595
9OGY|1|2|U|596
*
9OGY|1|2|A|640
9OGY|1|2|A|641
9OGY|1|2|U|642
9OGY|1|2|A|643
9OGY|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein S9 (Predicted)

Chain Y

uS12

Chain f

40S ribosomal protein S30