J5_9P7I_007

3D structure

PDB id

9P7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7I|1|S2|C|30
9P7I|1|S2|U|31
9P7I|1|S2|U|32
9P7I|1|S2|G|33
9P7I|1|S2|U|34
*
9P7I|1|S2|A|521
9P7I|1|S2|A|522
9P7I|1|S2|A|523
9P7I|1|S2|U|524
9P7I|1|S2|A|525
9P7I|1|S2|A|526
9P7I|1|S2|C|527
*
9P7I|1|S2|G|558
9P7I|1|S2|G|559
9P7I|1|S2|A|560
9P7I|1|S2|A|561
9P7I|1|S2|U|562
9P7I|1|S2|G|563
9P7I|1|S2|A|564
9P7I|1|S2|G|565
*
9P7I|1|S2|C|585
9P7I|1|S2|G|586
9P7I|1|S2|A|587
9P7I|1|S2|G|588
9P7I|1|S2|G|589
9P7I|1|S2|A|590
9P7I|1|S2|U|591
9P7I|1|S2|C|592
9P7I|1|S2|C|593
9P7I|1|S2|A|594
9P7I|1|S2|U|595
*
9P7I|1|S2|A|641
9P7I|1|S2|U|642
9P7I|1|S2|A|643
9P7I|1|S2|OMG|644

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain Se

Small ribosomal subunit protein eS30