J5_9P8I_004

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

AAGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU

Length

42 nucleotides

Bulged bases

9P8I|1|L5|A|3908, 9P8I|1|L5|A|4394, 9P8I|1|L5|U|4450, 9P8I|1|L5|U|4555

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|A|3902
9P8I|1|L5|A|3903
9P8I|1|L5|G|3904
9P8I|1|L5|A|3905
9P8I|1|L5|A|3906
9P8I|1|L5|G|3907
9P8I|1|L5|A|3908
9P8I|1|L5|C|3909
9P8I|1|L5|C|3910
*
9P8I|1|L5|OMG|4392
9P8I|1|L5|G|4393
9P8I|1|L5|A|4394
9P8I|1|L5|U|4395
9P8I|1|L5|A|4396
9P8I|1|L5|A|4397
9P8I|1|L5|C|4398
9P8I|1|L5|U|4399
9P8I|1|L5|G|4400
*
9P8I|1|L5|C|4444
9P8I|1|L5|U|4445
9P8I|1|L5|U|4446
9P8I|1|L5|5MC|4447
9P8I|1|L5|G|4448
9P8I|1|L5|A|4449
9P8I|1|L5|U|4450
9P8I|1|L5|G|4451
9P8I|1|L5|U|4452
9P8I|1|L5|C|4453
*
9P8I|1|L5|G|4528
9P8I|1|L5|G|4529
9P8I|1|L5|UR3|4530
9P8I|1|L5|U|4531
9P8I|1|L5|PSU|4532
9P8I|1|L5|A|4533
9P8I|1|L5|G|4534
*
9P8I|1|L5|PSU|4552
9P8I|1|L5|A|4553
9P8I|1|L5|G|4554
9P8I|1|L5|U|4555
9P8I|1|L5|U|4556
9P8I|1|L5|U|4557
9P8I|1|L5|U|4558

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29

Chain Pt

Transfer RNA; tRNA