J5_9PA7_001
3D structure
- PDB id
- 9PA7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S consensus ribosome with EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9PA7|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PA7|1|L5|G|19
9PA7|1|L5|U|20
9PA7|1|L5|G|21
*
9PA7|1|L8|C|35
9PA7|1|L8|G|36
9PA7|1|L8|A|37
9PA7|1|L8|U|38
9PA7|1|L8|G|39
9PA7|1|L8|A|40
9PA7|1|L8|A|41
9PA7|1|L8|G|42
*
9PA7|1|L8|C|101
9PA7|1|L8|G|102
9PA7|1|L8|A|103
9PA7|1|L8|A|104
9PA7|1|L8|C|105
9PA7|1|L8|G|106
*
9PA7|1|L8|C|113
9PA7|1|L8|G|114
*
9PA7|1|L8|U|136
9PA7|1|L8|A|137
9PA7|1|L8|C|138
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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