J5_9PGM_004

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

9PGM|1|A|U|2739, 9PGM|1|A|G|2916, 9PGM|1|A|G|2917, 9PGM|1|A|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9PGM_004 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.2463

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9PGM|1|A|U|2737
9PGM|1|A|U|2738
9PGM|1|A|U|2739
9PGM|1|A|A|2740
*
9PGM|1|A|U|2807
9PGM|1|A|U|2808
9PGM|1|A|C|2809
9PGM|1|A|G|2810
*
9PGM|1|A|C|2822
9PGM|1|A|U|2823
*
9PGM|1|A|A|2845
9PGM|1|A|G|2846
*
9PGM|1|A|C|2915
9PGM|1|A|G|2916
9PGM|1|A|G|2917
9PGM|1|A|A|2918
9PGM|1|A|A|2919
9PGM|1|A|C|2920
9PGM|1|A|A|2921
9PGM|1|A|A|2922

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial

Chain Ay

Transfer RNA; tRNA

Chain D

39S ribosomal protein L2, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial