J5_9PIH_004

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9PIH|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9PIH_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0434

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9PIH|1|a|C|47
9PIH|1|a|G|48
9PIH|1|a|A|49
9PIH|1|a|U|50
9PIH|1|a|G|51
9PIH|1|a|A|52
9PIH|1|a|A|53
9PIH|1|a|G|54
*
9PIH|1|a|C|116
9PIH|1|a|G|117
9PIH|1|a|A|118
9PIH|1|a|A|119
9PIH|1|a|U|120
9PIH|1|a|G|121
*
9PIH|1|a|C|130
9PIH|1|a|A|131
*
9PIH|1|a|U|148
9PIH|1|a|A|149
9PIH|1|a|U|150
*
9PIH|1|a|A|176
9PIH|1|a|G|177
9PIH|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34