J5_9PII_004

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9PII|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PII|1|a|C|47
9PII|1|a|G|48
9PII|1|a|A|49
9PII|1|a|U|50
9PII|1|a|G|51
9PII|1|a|A|52
9PII|1|a|A|53
9PII|1|a|G|54
*
9PII|1|a|C|116
9PII|1|a|G|117
9PII|1|a|A|118
9PII|1|a|A|119
9PII|1|a|U|120
9PII|1|a|G|121
*
9PII|1|a|C|130
9PII|1|a|A|131
*
9PII|1|a|U|148
9PII|1|a|A|149
9PII|1|a|U|150
*
9PII|1|a|A|176
9PII|1|a|G|177
9PII|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34