J5_9PJ7_008
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCAAAAUGC*GAC*GGC*GAGUCCAGG*UAC
- Length
- 27 nucleotides
- Bulged bases
- 9PJ7|1|a|G|1941, 9PJ7|1|a|G|1946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PJ7|1|a|G|1858
9PJ7|1|a|C|1859
9PJ7|1|a|A|1860
9PJ7|1|a|A|1861
9PJ7|1|a|A|1862
9PJ7|1|a|A|1863
9PJ7|1|a|U|1864
9PJ7|1|a|G|1865
9PJ7|1|a|C|1866
*
9PJ7|1|a|G|1890
9PJ7|1|a|A|1891
9PJ7|1|a|C|1892
*
9PJ7|1|a|G|1933
9PJ7|1|a|G|1934
9PJ7|1|a|C|1935
*
9PJ7|1|a|G|1939
9PJ7|1|a|A|1940
9PJ7|1|a|G|1941
9PJ7|1|a|U|1942
9PJ7|1|a|C|1943
9PJ7|1|a|C|1944
9PJ7|1|a|A|1945
9PJ7|1|a|G|1946
9PJ7|1|a|G|1947
*
9PJ7|1|a|U|2171
9PJ7|1|a|A|2172
9PJ7|1|a|C|2173
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
Coloring options: