J5_9PJ8_003
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAU*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9PJ8|1|A|A|109, 9PJ8|1|A|C|354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PJ8_003 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.117
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|C|62
9PJ8|1|A|A|63
9PJ8|1|A|A|64
9PJ8|1|A|G|65
*
9PJ8|1|A|C|106
9PJ8|1|A|G|107
9PJ8|1|A|A|108
9PJ8|1|A|A|109
9PJ8|1|A|C|110
9PJ8|1|A|G|111
9PJ8|1|A|G|112
9PJ8|1|A|G|113
*
9PJ8|1|A|C|316
9PJ8|1|A|A|317
9PJ8|1|A|U|318
*
9PJ8|1|A|G|339
9PJ8|1|A|A|340
9PJ8|1|A|C|341
*
9PJ8|1|A|G|352
9PJ8|1|A|G|353
9PJ8|1|A|C|354
9PJ8|1|A|A|355
9PJ8|1|A|G|356
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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