J5_9PJ9_010
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9PJ9|1|a|U|2258, 9PJ9|1|a|G|2610, 9PJ9|1|a|G|2611, 9PJ9|1|a|A|2612, 9PJ9|1|a|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PJ9_010 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0877
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|U|2256
9PJ9|1|a|U|2257
9PJ9|1|a|U|2258
9PJ9|1|a|A|2259
*
9PJ9|1|a|U|2425
9PJ9|1|a|U|2426
9PJ9|1|a|U|2427
9PJ9|1|a|G|2428
*
9PJ9|1|a|C|2440
9PJ9|1|a|G|2441
*
9PJ9|1|a|C|2463
9PJ9|1|a|G|2464
*
9PJ9|1|a|C|2609
9PJ9|1|a|G|2610
9PJ9|1|a|G|2611
9PJ9|1|a|A|2612
9PJ9|1|a|U|2613
9PJ9|1|a|A|2614
9PJ9|1|a|A|2615
9PJ9|1|a|A|2616
9PJ9|1|a|A|2617
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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