J5_9PKB_008
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9PKB|1|S2|A|92, 9PKB|1|S2|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PKB_008 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0758
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9PKB|1|S2|C|53
9PKB|1|S2|A|54
9PKB|1|S2|U|55
9PKB|1|S2|G|56
*
9PKB|1|S2|C|89
9PKB|1|S2|G|90
9PKB|1|S2|A|91
9PKB|1|S2|A|92
9PKB|1|S2|PSU|93
9PKB|1|S2|G|94
9PKB|1|S2|G|95
9PKB|1|S2|C|96
*
9PKB|1|S2|G|434
9PKB|1|S2|A|435
9PKB|1|S2|OMG|436
*
9PKB|1|S2|C|457
9PKB|1|S2|A|458
9PKB|1|S2|C|459
*
9PKB|1|S2|G|470
9PKB|1|S2|G|471
9PKB|1|S2|C|472
9PKB|1|S2|A|473
9PKB|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: