J5_9PKG_003

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9PKG|1|L5|G|3620, 9PKG|1|L5|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|2855
9PKG|1|L5|C|2856
9PKG|1|L5|A|2857
9PKG|1|L5|A|2858
9PKG|1|L5|G|2859
9PKG|1|L5|C|2860
9PKG|1|L5|OMC|2861
9PKG|1|L5|G|2862
9PKG|1|L5|G|2863
*
9PKG|1|L5|U|2887
9PKG|1|L5|G|2888
*
9PKG|1|L5|U|3613
9PKG|1|L5|G|3614
*
9PKG|1|L5|C|3618
9PKG|1|L5|G|3619
9PKG|1|L5|G|3620
9PKG|1|L5|A|3621
9PKG|1|L5|C|3622
9PKG|1|L5|C|3623
9PKG|1|L5|A|3624
9PKG|1|L5|G|3625
9PKG|1|L5|G|3626
*
9PKG|1|L5|C|3835
9PKG|1|L5|A|3836
9PKG|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

Ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA