J5_9PN5_007

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9PN5|1|B5|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|C|31
9PN5|1|B5|U|32
9PN5|1|B5|U|33
9PN5|1|B5|G|34
9PN5|1|B5|U|35
*
9PN5|1|B5|A|473
9PN5|1|B5|A|474
9PN5|1|B5|A|475
9PN5|1|B5|U|476
9PN5|1|B5|A|477
9PN5|1|B5|A|478
9PN5|1|B5|C|479
*
9PN5|1|B5|G|509
9PN5|1|B5|G|510
9PN5|1|B5|A|511
9PN5|1|B5|A|512
9PN5|1|B5|U|513
9PN5|1|B5|G|514
*
9PN5|1|B5|C|543
9PN5|1|B5|A|544
9PN5|1|B5|A|545
9PN5|1|B5|U|546
*
9PN5|1|B5|A|592
9PN5|1|B5|U|593
9PN5|1|B5|A|594
9PN5|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

Small ribosomal subunit protein uS4A

Chain BX

Small ribosomal subunit protein uS12A

Chain Be

Small ribosomal subunit protein eS30A