J5_9PRD_004
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 9PRD|1|A|U|2739, 9PRD|1|A|G|2916, 9PRD|1|A|G|2917, 9PRD|1|A|A|2918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PRD_004 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2403
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PRD|1|A|U|2737
9PRD|1|A|U|2738
9PRD|1|A|U|2739
9PRD|1|A|A|2740
*
9PRD|1|A|U|2807
9PRD|1|A|U|2808
9PRD|1|A|C|2809
9PRD|1|A|G|2810
*
9PRD|1|A|C|2822
9PRD|1|A|U|2823
*
9PRD|1|A|A|2845
9PRD|1|A|G|2846
*
9PRD|1|A|C|2915
9PRD|1|A|G|2916
9PRD|1|A|G|2917
9PRD|1|A|A|2918
9PRD|1|A|A|2919
9PRD|1|A|C|2920
9PRD|1|A|A|2921
9PRD|1|A|A|2922
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
Coloring options: