J5_9Q1Q_001
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9Q1Q|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q1Q_001 not in the Motif Atlas
- Homologous match to J5_8GLP_001
- Geometric discrepancy: 0.1042
- The information below is about J5_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q1Q|1|5|G|19
9Q1Q|1|5|U|20
9Q1Q|1|5|G|21
*
9Q1Q|1|8|C|35
9Q1Q|1|8|G|36
9Q1Q|1|8|A|37
9Q1Q|1|8|U|38
9Q1Q|1|8|G|39
9Q1Q|1|8|A|40
9Q1Q|1|8|A|41
9Q1Q|1|8|G|42
*
9Q1Q|1|8|C|101
9Q1Q|1|8|G|102
9Q1Q|1|8|A|103
9Q1Q|1|8|A|104
9Q1Q|1|8|C|105
9Q1Q|1|8|G|106
*
9Q1Q|1|8|C|113
9Q1Q|1|8|G|114
*
9Q1Q|1|8|U|136
9Q1Q|1|8|A|137
9Q1Q|1|8|C|138
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15
- Chain X
- Large ribosomal subunit protein uL23
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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