J5_9Q1Q_005
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|3922, 9Q1Q|1|5|A|4376, 9Q1Q|1|5|G|4377, 9Q1Q|1|5|A|4378, 9Q1Q|1|5|A|4379, 9Q1Q|1|5|A|4380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|U|3920
9Q1Q|1|5|U|3921
9Q1Q|1|5|G|3922
9Q1Q|1|5|A|3923
*
9Q1Q|1|5|U|4188
9Q1Q|1|5|U|4189
9Q1Q|1|5|U|4190
9Q1Q|1|5|G|4191
*
9Q1Q|1|5|C|4204
9Q1Q|1|5|A|4205
*
9Q1Q|1|5|U|4227
9Q1Q|1|5|G|4228
*
9Q1Q|1|5|C|4375
9Q1Q|1|5|A|4376
9Q1Q|1|5|G|4377
9Q1Q|1|5|A|4378
9Q1Q|1|5|A|4379
9Q1Q|1|5|A|4380
9Q1Q|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L15
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- eL29
- Chain o
- eL42
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