J5_9Q1Q_008
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9Q1Q|1|9|U|55, 9Q1Q|1|9|A|92, 9Q1Q|1|9|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q1Q_008 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0944
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|9|C|53
9Q1Q|1|9|A|54
9Q1Q|1|9|U|55
9Q1Q|1|9|G|56
*
9Q1Q|1|9|C|89
9Q1Q|1|9|G|90
9Q1Q|1|9|A|91
9Q1Q|1|9|A|92
9Q1Q|1|9|U|93
9Q1Q|1|9|G|94
9Q1Q|1|9|G|95
9Q1Q|1|9|C|96
*
9Q1Q|1|9|G|434
9Q1Q|1|9|A|435
9Q1Q|1|9|G|436
*
9Q1Q|1|9|C|457
9Q1Q|1|9|A|458
9Q1Q|1|9|C|459
*
9Q1Q|1|9|G|470
9Q1Q|1|9|G|471
9Q1Q|1|9|C|472
9Q1Q|1|9|A|473
9Q1Q|1|9|G|474
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain JJ
- 40S ribosomal protein S9
- Chain V
- Large ribosomal subunit protein uL14
- Chain YY
- 40S ribosomal protein S24
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