J5_9Q2O_007
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9Q2O|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q2O_007 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.1499
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q2O|1|9|C|30
9Q2O|1|9|U|31
9Q2O|1|9|U|32
9Q2O|1|9|G|33
9Q2O|1|9|U|34
*
9Q2O|1|9|A|521
9Q2O|1|9|A|522
9Q2O|1|9|A|523
9Q2O|1|9|U|524
9Q2O|1|9|A|525
9Q2O|1|9|A|526
9Q2O|1|9|C|527
*
9Q2O|1|9|G|558
9Q2O|1|9|G|559
9Q2O|1|9|A|560
9Q2O|1|9|A|561
9Q2O|1|9|U|562
9Q2O|1|9|G|563
*
9Q2O|1|9|C|592
9Q2O|1|9|C|593
9Q2O|1|9|A|594
9Q2O|1|9|U|595
*
9Q2O|1|9|A|641
9Q2O|1|9|U|642
9Q2O|1|9|A|643
9Q2O|1|9|G|644
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- 40S ribosomal protein S23
- Chain ee
- Small ribosomal subunit protein eS30
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