J5_9Q3Q_003
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9Q3Q|1|A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q3Q_003 not in the Motif Atlas
- Homologous match to J5_8B0X_006
- Geometric discrepancy: 0.0294
- The information below is about J5_8B0X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9Q3Q|1|A|C|584
9Q3Q|1|A|G|585
9Q3Q|1|A|A|586
9Q3Q|1|A|C|587
9Q3Q|1|A|U|588
9Q3Q|1|A|U|589
*
9Q3Q|1|A|A|668
9Q3Q|1|A|G|669
9Q3Q|1|A|A|670
9Q3Q|1|A|C|671
*
9Q3Q|1|A|G|809
9Q3Q|1|A|U|810
9Q3Q|1|A|U|811
9Q3Q|1|A|C|812
*
9Q3Q|1|A|G|1195
9Q3Q|1|A|C|1196
*
9Q3Q|1|A|G|1250
9Q3Q|1|A|C|1251
9Q3Q|1|A|G|1252
9Q3Q|1|A|A|1253
9Q3Q|1|A|A|1254
9Q3Q|1|A|U|1255
9Q3Q|1|A|G|1256
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain E
- Large ribosomal subunit protein uL4
- Chain N
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L20
- Chain T
- Large ribosomal subunit protein bL21
Coloring options: