Loop J5_9Q3R

3D structure

PDB id: 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length: 37 nucleotides
Bulged bases: 9Q3R|1|A|A|2062, 9Q3R|1|A|A|2448, 9Q3R|1|A|H2U|2449, 9Q3R|1|A|U|2609
QA status: Modified nucleotides: H2U, 2MA, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q3R|1|A|G|2057
9Q3R|1|A|A|2058
9Q3R|1|A|A|2059
9Q3R|1|A|A|2060
9Q3R|1|A|G|2061
9Q3R|1|A|A|2062
9Q3R|1|A|C|2063
9Q3R|1|A|C|2064
*
9Q3R|1|A|G|2446
9Q3R|1|A|G|2447
9Q3R|1|A|A|2448
9Q3R|1|A|H2U|2449
9Q3R|1|A|A|2450
9Q3R|1|A|A|2451
9Q3R|1|A|C|2452
9Q3R|1|A|A|2453
*
9Q3R|1|A|U|2500
9Q3R|1|A|C|2501
9Q3R|1|A|G|2502
9Q3R|1|A|2MA|2503
9Q3R|1|A|PSU|2504
9Q3R|1|A|G|2505
9Q3R|1|A|U|2506
9Q3R|1|A|C|2507
*
9Q3R|1|A|G|2582
9Q3R|1|A|G|2583
9Q3R|1|A|U|2584
9Q3R|1|A|U|2585
9Q3R|1|A|U|2586
9Q3R|1|A|A|2587
9Q3R|1|A|G|2588
*
9Q3R|1|A|C|2606
9Q3R|1|A|G|2607
9Q3R|1|A|G|2608
9Q3R|1|A|U|2609
9Q3R|1|A|C|2610
9Q3R|1|A|C|2611

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 4: 50S ribosomal protein L32
Chain C: 50S ribosomal protein L2
Chain D: 50S ribosomal protein L3
Chain E: Large ribosomal subunit protein uL4
Chain N: 50S ribosomal protein L15
Chain U: 50S ribosomal protein L22
Chain x: Transfer RNA; tRNA

J5_9Q3R_005