J5_9Q6S_010

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9Q6S|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9Q6S_010 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0792

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.4

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9Q6S|1|2A|C|47
9Q6S|1|2A|G|48
9Q6S|1|2A|A|49
9Q6S|1|2A|U|50
9Q6S|1|2A|G|51
9Q6S|1|2A|A|52
9Q6S|1|2A|A|53
9Q6S|1|2A|G|54
*
9Q6S|1|2A|C|116
9Q6S|1|2A|G|117
9Q6S|1|2A|A|118
9Q6S|1|2A|A|119
9Q6S|1|2A|U|120
9Q6S|1|2A|G|121
*
9Q6S|1|2A|C|130
9Q6S|1|2A|G|131
*
9Q6S|1|2A|C|148
9Q6S|1|2A|A|149
9Q6S|1|2A|C|150
*
9Q6S|1|2A|G|176
9Q6S|1|2A|G|177
9Q6S|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23