J5_9Q6U_015

3D structure

PDB id

9Q6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

9Q6U|1|2A|G|1758, 9Q6U|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9Q6U_015 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.0706

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9Q6U|1|2A|G|1674
9Q6U|1|2A|C|1675
9Q6U|1|2A|A|1676
9Q6U|1|2A|A|1677
9Q6U|1|2A|G|1678
9Q6U|1|2A|U|1679
9Q6U|1|2A|U|1680
9Q6U|1|2A|G|1681
9Q6U|1|2A|G|1682
*
9Q6U|1|2A|U|1706
9Q6U|1|2A|G|1707
*
9Q6U|1|2A|C|1751
9Q6U|1|2A|C|1752
*
9Q6U|1|2A|G|1756
9Q6U|1|2A|U|1757
9Q6U|1|2A|G|1758
9Q6U|1|2A|A|1759
9Q6U|1|2A|A|1760
9Q6U|1|2A|C|1761
9Q6U|1|2A|A|1762
9Q6U|1|2A|G|1763
9Q6U|1|2A|G|1764
*
9Q6U|1|2A|C|1988
9Q6U|1|2A|G|1989
9Q6U|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA