J5_9Q87_005
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9Q87|1|a|A|532, 9Q87|1|a|U|564
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q87_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0383
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q87|1|a|C|531
9Q87|1|a|A|532
9Q87|1|a|G|533
*
9Q87|1|a|C|562
9Q87|1|a|G|563
9Q87|1|a|U|564
9Q87|1|a|A|565
9Q87|1|a|C|566
*
9Q87|1|a|G|579
9Q87|1|a|G|580
9Q87|1|a|G|581
*
9Q87|1|a|C|1263
9Q87|1|a|A|1264
*
9Q87|1|a|U|2021
9Q87|1|a|G|2022
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain i
- Large ribosomal subunit protein uL13
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
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