J5_9QEG_001

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

9QEG|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9QEG_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0648

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9QEG|1|A|C|47
9QEG|1|A|G|48
9QEG|1|A|A|49
9QEG|1|A|U|50
9QEG|1|A|G|51
9QEG|1|A|A|52
9QEG|1|A|A|53
9QEG|1|A|G|54
*
9QEG|1|A|C|115
9QEG|1|A|G|116
9QEG|1|A|A|117
9QEG|1|A|A|118
9QEG|1|A|U|119
9QEG|1|A|G|120
*
9QEG|1|A|C|129
9QEG|1|A|A|130
*
9QEG|1|A|U|149
9QEG|1|A|A|150
9QEG|1|A|U|151
*
9QEG|1|A|A|178
9QEG|1|A|A|179
9QEG|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34