J5_9QEG_005
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9QEG|1|A|A|2475, 9QEG|1|A|H2U|2476, 9QEG|1|A|U|2612, 9QEG|1|A|U|2636
- QA status
- Modified nucleotides: H2U, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QEG|1|A|G|2084
9QEG|1|A|A|2085
9QEG|1|A|A|2086
9QEG|1|A|A|2087
9QEG|1|A|G|2088
9QEG|1|A|A|2089||A
9QEG|1|A|C|2090
9QEG|1|A|C|2091
*
9QEG|1|A|G|2473
9QEG|1|A|G|2474
9QEG|1|A|A|2475
9QEG|1|A|H2U|2476
9QEG|1|A|A|2477
9QEG|1|A|A|2478
9QEG|1|A|C|2479
9QEG|1|A|A|2480
*
9QEG|1|A|U|2527
9QEG|1|A|C|2528
9QEG|1|A|G|2529
9QEG|1|A|2MA|2530
9QEG|1|A|U|2531
9QEG|1|A|G|2532
9QEG|1|A|U|2533
9QEG|1|A|C|2534
*
9QEG|1|A|G|2609
9QEG|1|A|G|2610
9QEG|1|A|U|2611
9QEG|1|A|U|2612
9QEG|1|A|C|2613
9QEG|1|A|A|2614
9QEG|1|A|G|2615
*
9QEG|1|A|C|2633
9QEG|1|A|G|2634
9QEG|1|A|G|2635
9QEG|1|A|U|2636
9QEG|1|A|C|2637
9QEG|1|A|C|2638
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- Large ribosomal subunit protein uL3
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
- Chain K
- Large ribosomal subunit protein uL16
- Chain Z
- Large ribosomal subunit protein bL32
Coloring options: