J5_9QEG_008
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9QEG|1|Aa|A|108, 9QEG|1|Aa|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9QEG_008 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0885
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9QEG|1|Aa|C|59
9QEG|1|Aa|A|60
9QEG|1|Aa|A|61
9QEG|1|Aa|G|62
*
9QEG|1|Aa|C|105
9QEG|1|Aa|G|106
9QEG|1|Aa|G|107
9QEG|1|Aa|A|108
9QEG|1|Aa|C|109
9QEG|1|Aa|G|110
9QEG|1|Aa|G|111
9QEG|1|Aa|G|112
*
9QEG|1|Aa|C|322
9QEG|1|Aa|A|323
9QEG|1|Aa|C|324
*
9QEG|1|Aa|G|345
9QEG|1|Aa|A|346
9QEG|1|Aa|C|347
*
9QEG|1|Aa|G|358
9QEG|1|Aa|G|359
9QEG|1|Aa|C|360
9QEG|1|Aa|A|361
9QEG|1|Aa|G|362
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ap
- Small ribosomal subunit protein bS16
- Chain At
- Small ribosomal subunit protein bS20
- Chain I
- Large ribosomal subunit protein uL14
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