J5_9QIW_003

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CG*UAAG*UUGAUCU*GAC*GGG

Length

19 nucleotides

Bulged bases

9QIW|1|L5|G|4291, 9QIW|1|L5|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QIW|1|L5|C|4199
9QIW|1|L5|G|4200
*
9QIW|1|L5|U|4232
9QIW|1|L5|A|4233
9QIW|1|L5|A|4234
9QIW|1|L5|G|4235
*
9QIW|1|L5|U|4289
9QIW|1|L5|U|4290
9QIW|1|L5|G|4291
9QIW|1|L5|A|4292
9QIW|1|L5|U|4293
9QIW|1|L5|C|4294
9QIW|1|L5|U|4295
*
9QIW|1|L5|G|4316
9QIW|1|L5|A|4317
9QIW|1|L5|C|4318
*
9QIW|1|L5|G|4329
9QIW|1|L5|G|4330
9QIW|1|L5|G|4331

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain CJ

Ribosome production factor 2 homolog

Chain CK

Ribosome biogenesis regulatory protein homolog

Chain LD

60S ribosomal protein L5