J5_9QQA_002

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|A2|C|30
9QQA|1|A2|U|31
9QQA|1|A2|U|32
9QQA|1|A2|G|33
9QQA|1|A2|PSU|34
*
9QQA|1|A2|A|522
9QQA|1|A2|A|523
9QQA|1|A2|A|524
9QQA|1|A2|U|525
9QQA|1|A2|A|526
9QQA|1|A2|A|527
9QQA|1|A2|C|528
*
9QQA|1|A2|G|559
9QQA|1|A2|G|560
9QQA|1|A2|A|561
9QQA|1|A2|A|562
9QQA|1|A2|U|563
9QQA|1|A2|G|564
9QQA|1|A2|A|565
9QQA|1|A2|G|566
*
9QQA|1|A2|C|586
9QQA|1|A2|G|587
9QQA|1|A2|A|588
9QQA|1|A2|G|589
9QQA|1|A2|G|590
9QQA|1|A2|A2M|591
9QQA|1|A2|U|592
9QQA|1|A2|C|593
9QQA|1|A2|C|594
9QQA|1|A2|A|595
9QQA|1|A2|U|596
*
9QQA|1|A2|A|642
9QQA|1|A2|U|643
9QQA|1|A2|A|644
9QQA|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23