J5_9QQA_004

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9QQA|1|A2|G|126, 9QQA|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|A2|G|123
9QQA|1|A2|U|124
9QQA|1|A2|C|125
9QQA|1|A2|G|126
9QQA|1|A2|C|127
9QQA|1|A2|U|128
9QQA|1|A2|C|129
*
9QQA|1|A2|G|183
9QQA|1|A2|G|184
9QQA|1|A2|G|185
*
9QQA|1|A2|U|214
9QQA|1|A2|G|215
*
9QQA|1|A2|C|311
9QQA|1|A2|C|312
9QQA|1|A2|G|313
*
9QQA|1|A2|C|338
9QQA|1|A2|G|339
9QQA|1|A2|A|340
9QQA|1|A2|C|341
9QQA|1|A2|C|342

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8