J5_9QQA_007

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QQA|1|B5|G|3352, 9QQA|1|B5|G|3357

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|G|2698
9QQA|1|B5|C|2699
9QQA|1|B5|A|2700
9QQA|1|B5|A|2701
9QQA|1|B5|G|2702
9QQA|1|B5|C|2703
9QQA|1|B5|OMC|2704
9QQA|1|B5|G|2705
9QQA|1|B5|G|2706
*
9QQA|1|B5|U|2730
9QQA|1|B5|G|2731
*
9QQA|1|B5|U|3345
9QQA|1|B5|G|3346
*
9QQA|1|B5|C|3350
9QQA|1|B5|G|3351
9QQA|1|B5|G|3352
9QQA|1|B5|A|3353
9QQA|1|B5|C|3354
9QQA|1|B5|C|3355
9QQA|1|B5|A|3356
9QQA|1|B5|G|3357
9QQA|1|B5|G|3358
*
9QQA|1|B5|C|3567
9QQA|1|B5|A|3568
9QQA|1|B5|C|3569

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Ribosomal protein L3

Chain BR

Ribosomal protein L19

Chain BV

Ribosomal protein L23

Chain BW

Ribosomal protein L24