J5_9QQA_008
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9QQA|1|B5|A|3640, 9QQA|1|B5|A|4140, 9QQA|1|B5|G|4197, 9QQA|1|B5|U|4301, 9QQA|1|B5|U|4302
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQA|1|B5|A|3635
9QQA|1|B5|G|3636
9QQA|1|B5|A|3637
9QQA|1|B5|A|3638
9QQA|1|B5|G|3639
9QQA|1|B5|A|3640
9QQA|1|B5|C|3641
9QQA|1|B5|C|3642
*
9QQA|1|B5|OMG|4138
9QQA|1|B5|G|4139
9QQA|1|B5|A|4140
9QQA|1|B5|U|4141
9QQA|1|B5|A|4142
9QQA|1|B5|A|4143
9QQA|1|B5|C|4144
9QQA|1|B5|U|4145
9QQA|1|B5|G|4146
*
9QQA|1|B5|C|4190
9QQA|1|B5|U|4191
9QQA|1|B5|U|4192
9QQA|1|B5|5MC|4193
9QQA|1|B5|G|4194
9QQA|1|B5|A|4195
9QQA|1|B5|U|4196
9QQA|1|B5|G|4197
9QQA|1|B5|U|4198
9QQA|1|B5|C|4199
*
9QQA|1|B5|G|4274
9QQA|1|B5|G|4275
9QQA|1|B5|UR3|4276
9QQA|1|B5|U|4277
9QQA|1|B5|PSU|4278
9QQA|1|B5|A|4279
9QQA|1|B5|G|4280
*
9QQA|1|B5|PSU|4298
9QQA|1|B5|A|4299
9QQA|1|B5|G|4300
9QQA|1|B5|U|4301
9QQA|1|B5|U|4302
9QQA|1|B5|U|4303
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BB
- Ribosomal protein L3
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BI
- 60S ribosomal protein L10
- Chain BK
- Nascent chain
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
Coloring options: