J5_9QQB_005

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UG*CGAUGAAG*CGAACG*CG*UA

Length

20 nucleotides

Bulged bases

9QQB|1|B8|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|U|20
9QQB|1|B5|G|21
*
9QQB|1|B8|C|35
9QQB|1|B8|G|36
9QQB|1|B8|A|37
9QQB|1|B8|U|38
9QQB|1|B8|G|39
9QQB|1|B8|A|40
9QQB|1|B8|A|41
9QQB|1|B8|G|42
*
9QQB|1|B8|C|101
9QQB|1|B8|G|102
9QQB|1|B8|A|103
9QQB|1|B8|A|104
9QQB|1|B8|C|105
9QQB|1|B8|G|106
*
9QQB|1|B8|C|113
9QQB|1|B8|G|114
*
9QQB|1|B8|U|136
9QQB|1|B8|A|137

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BN

Ribosomal protein L15

Chain BX

Large ribosomal subunit protein uL23

Chain Bh

60S ribosomal protein L35

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like