J5_9QQB_006
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9QQB|1|B5|C|2132, 9QQB|1|B5|U|2193
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQB|1|B5|G|1279
9QQB|1|B5|G|1280
9QQB|1|B5|A|1281
9QQB|1|B5|G|1282
9QQB|1|B5|U|1283
9QQB|1|B5|OMC|1284
*
9QQB|1|B5|G|1471
9QQB|1|B5|G|1472
9QQB|1|B5|A|1473
9QQB|1|B5|C|1474
*
9QQB|1|B5|G|1613
9QQB|1|B5|U|1614
9QQB|1|B5|U|1615
9QQB|1|B5|C|1616
*
9QQB|1|B5|G|2131
9QQB|1|B5|C|2132
9QQB|1|B5|C|2133
*
9QQB|1|B5|G|2188
9QQB|1|B5|C|2189
9QQB|1|B5|A|2190
9QQB|1|B5|G|2191
9QQB|1|B5|A|2192
9QQB|1|B5|U|2193
9QQB|1|B5|OMC|2194
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Be
- Ribosomal protein L32
- Chain Br
- [histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B
Coloring options: