J5_9QQB_007
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9QQB|1|B5|G|3352, 9QQB|1|B5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9QQB_007 not in the Motif Atlas
- Homologous match to J5_8GLP_003
- Geometric discrepancy: 0.0837
- The information below is about J5_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
9QQB|1|B5|G|2698
9QQB|1|B5|C|2699
9QQB|1|B5|A|2700
9QQB|1|B5|A|2701
9QQB|1|B5|G|2702
9QQB|1|B5|C|2703
9QQB|1|B5|OMC|2704
9QQB|1|B5|G|2705
9QQB|1|B5|G|2706
*
9QQB|1|B5|U|2730
9QQB|1|B5|G|2731
*
9QQB|1|B5|U|3345
9QQB|1|B5|G|3346
*
9QQB|1|B5|C|3350
9QQB|1|B5|G|3351
9QQB|1|B5|G|3352
9QQB|1|B5|A|3353
9QQB|1|B5|C|3354
9QQB|1|B5|C|3355
9QQB|1|B5|A|3356
9QQB|1|B5|G|3357
9QQB|1|B5|G|3358
*
9QQB|1|B5|C|3567
9QQB|1|B5|A|3568
9QQB|1|B5|C|3569
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Ribosomal protein L3
- Chain BR
- Ribosomal protein L19
- Chain BV
- Ribosomal protein L23
- Chain BW
- Ribosomal protein L24
Coloring options: