J5_9QQB_007

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QQB|1|B5|G|3352, 9QQB|1|B5|G|3357

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|G|2698
9QQB|1|B5|C|2699
9QQB|1|B5|A|2700
9QQB|1|B5|A|2701
9QQB|1|B5|G|2702
9QQB|1|B5|C|2703
9QQB|1|B5|OMC|2704
9QQB|1|B5|G|2705
9QQB|1|B5|G|2706
*
9QQB|1|B5|U|2730
9QQB|1|B5|G|2731
*
9QQB|1|B5|U|3345
9QQB|1|B5|G|3346
*
9QQB|1|B5|C|3350
9QQB|1|B5|G|3351
9QQB|1|B5|G|3352
9QQB|1|B5|A|3353
9QQB|1|B5|C|3354
9QQB|1|B5|C|3355
9QQB|1|B5|A|3356
9QQB|1|B5|G|3357
9QQB|1|B5|G|3358
*
9QQB|1|B5|C|3567
9QQB|1|B5|A|3568
9QQB|1|B5|C|3569

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Ribosomal protein L3

Chain BR

Ribosomal protein L19

Chain BV

Ribosomal protein L23

Chain BW

Ribosomal protein L24